GildaMatcher

class GildaMatcher(grounder: gilda.Grounder, *, reference_cls: type[R] | None = None)[source]

Bases: Matcher[R], Generic[R]

A matcher that uses gilda as a backend.

Initialize a grounder wrapping a gilda.Grounder.

Methods Summary

`default`()	Get the default/builtin grounder.
`from_literal_mappings`(literal_mappings, *[, ...])	Initialize a grounder wrapping a `gilda.Grounder`.
`get_matches`(text[, context, organisms, ...])	Get matches in the SSSLM format using `gilda.Grounder.ground()`.
`not_empty`()	Return if this matcher has lookups indexed in it.

Methods Documentation

classmethod default() → Self[source]: Get the default/builtin grounder.

classmethod from_literal_mappings(literal_mappings: Iterable[LiteralMapping[R]], *, prefix_priority: list[str] | None = None, grounder_cls: type[gilda.Grounder] | None = None, filter_duplicates: bool = True, on_error: GildaErrorPolicy = 'ignore') → Self[source]

Initialize a grounder wrapping a gilda.Grounder.

Parameters:

literal_mappings – The literal mappings to populate the grounder
prefix_priority – The priority list of prefixes to break ties. Maps to namespace_priority in gilda.Grounder.__init__()
grounder_cls – A custom subclass of gilda.Grounder, if given.
filter_duplicates – Should duplicates be filtered using gilda.term.filter_out_duplicates()? Defaults to true.
on_error – The policy for what to do on error converting to Gilda

get_matches(text: str, context: str | None = None, organisms: list[str] | None = None, namespaces: list[str] | None = None) → list[Match][source]: Get matches in the SSSLM format using gilda.Grounder.ground().

not_empty() → bool[source]: Return if this matcher has lookups indexed in it.